洪瑞鴻 Jui-Hung Hung 教授

1.Ameres SL, Horwich MD, Hung J-H, Xu J, Ghildiyal M, Weng Z, Zamore PD. Target RNA–directed trimming and tailing of small silencing RNAs. Science. 320:1534-1539, 2010
2.Hung J-H, Whitfield TW, Yang TH, Hu Z, Weng Z, DeLisi C. Identification of functional modules that correlate with phenotypic difference: the influence of network topology. Genome Biology.11:R23, 2010
3.Hung J-H, Yang TH, Hu Z, Weng Z, Delisi C. Gene set enrichment analysis: performance evaluation and usage guidelines. Brief Bioinformatics 2011 Sep 7.
4.Yildirim O, Li R, Hung J-H, Chen PB, Dong X, Ee L-Y, Weng Z, Rando OJ and Fazzio TG. Mbd3/NURD complex regulates expression of 5-hydroxymethylcytosine marked genes in embryonic stem cells. Cell. Volume 147, Issue 7, 1498-1510, 23 December 2011
5.Xie J, Ameres SL, Friedline R, Hung J-H, Zhang Y, Xie Q, Zhong L, Su Q, He R, Li M, Li H, Mu X, Zhang H, Broderick JA, Kim JK, Weng Z, Flotte TR, Zamore PD, Gao G. Long-term, efficient inhibition of microRNA function in mice using rAAV vectors. Nature Methods, 2012 Mar 4;9(4):403-9
6.Ryuya Fukunaga, Bo W. Han, Hung J-H, Jia Xu, Zhiping Weng, Phillip D. Zamore Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals. Cell. 11 October 2012
7.Chou M.-T., Han B. W., Hsiao C.-P., Zamore P. D., Weng Z. and Hung J.-H. A Computational Framework for Detecting Non-Templated Tailing of Small Silencing RNAs. Nucleic Acids Research. Volume: 10. 1093. 2015.
8.Chang CH, Chou MT, Wu YC, Hong TW, Li YL, Yang CH, Hung J.-H., sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping. Bioinformatics. 2016.

1.高通量次世代定序晶片與分析演算法之開發
2.微陣列影像處理與特徵型態識別
3.生物資訊演算法C++泛型函式庫
4.微小干擾核醣核酸之生成機制
5.幹細胞表觀基因體學